Special

DmeEX6018573 @ dm6

Exon Skipping

Gene
FBgn0010051 | Itp-r83A
Description
The gene Inositol 1,4,5,-trisphosphate receptor is referred to in FlyBase by the symbol DmelItpr (CG1063, FBgn0010051). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:5517117..5539411. Its molecular function is described by: calcium ion binding; phosphatidylinositol binding; inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity; inositol 1,4,5 trisphosphate binding. It is involved in the biological process described with 22 unique terms, many of which group under: behavior; response to nutrient levels; response to starvation; sensory perception; regulation of feeding behavior. 52 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; alimentary canal; cellular anatomical entity; developing material anatomical entity; organelle. The phenotypic classes of alleles include: phenotype; increased mortality; size defective; body size defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-18 embryonic stages.
Coordinates
chr3R:5528038-5529144:+
Coord C1 exon
chr3R:5528038-5528108
Coord A exon
chr3R:5528165-5528280
Coord C2 exon
chr3R:5528340-5529144
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTATGATAAAAATTTTCAGACT
3' ss Score
3.6
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CCTGGTCGATGATCGCACAGTGGTGTGTCCCGAGGCCGGAGATCTCAGCTGTCCGCCTAAGAAGTTCAGGG
Seq A exon
ACTGCCTCATCAAAATATGCCCCATGAACCGCTATTCTGCGCAGAAGCAATTTTGGAAAGCAGCTAAGCAATCGGCCAGCTCCAATACGGATCCCAATCTCCTCAAGCGTTTGCAT
Seq C2 exon
CATGCGGCGGAGATCGAGAAGAAACAAAACGAGACGGAGAACAAGAAGCTGCTGGGCACCTCAATCCAATATGGACGAGCTGTGGTGCAGCTACTGCATTTGAAGTCCAACAAATATTTAACAGTTAACAAGCGACTGCCGTCGCTGCTGGAGAAGAATGCCATGCGCGTTTATCTGGATGCCAACGGGAACGAGGGGTCGTGGTTCTACATCAAGCCCTTCTACAAGCTTCGCTCCATCGGCGACTACGTGGTTGTTGGTGACAAGGTTATTTTGAGTCCGGTGAATGCGGATCAACAGAATCTCCATGTGGCAGCCAACTACGAACTGCCCGACAATCCCGGCTGCAAGGAGGTCAACGTTCTGAACTCGTCGACCTCCTGGAAGATCTCGCTGTTCATGGAACACAAGGAGAACCAGGAGCACATTCTCAAGGGCGGAGACGTGGTGCGTCTATTCCATGCCGAGCAGGAAAAGTTTCTCACCATGGACGAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0010051-'10-4,'10-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):

C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(16.6=100)
C2:
PF087096=Ins145_P3_rec=PD(60.3=51.3),PF0281514=MIR=PU(59.1=47.2)


Main Inclusion Isoform:
FBpp0078335


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0078336, FBpp0310670


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCTCAGCTGTCCGCCTA
R:
TGATGTAGAACCACGACCCCT
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)