DmeEX6018573 @ dm6
Exon Skipping
Gene
FBgn0010051 | Itp-r83A
Description
The gene Inositol 1,4,5,-trisphosphate receptor is referred to in FlyBase by the symbol DmelItpr (CG1063, FBgn0010051). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3R:5517117..5539411. Its molecular function is described by: calcium ion binding; phosphatidylinositol binding; inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity; inositol 1,4,5 trisphosphate binding. It is involved in the biological process described with 22 unique terms, many of which group under: behavior; response to nutrient levels; response to starvation; sensory perception; regulation of feeding behavior. 52 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; alimentary canal; cellular anatomical entity; developing material anatomical entity; organelle. The phenotypic classes of alleles include: phenotype; increased mortality; size defective; body size defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-18 embryonic stages.
Coordinates
chr3R:5528038-5529144:+
Coord C1 exon
chr3R:5528038-5528108
Coord A exon
chr3R:5528165-5528280
Coord C2 exon
chr3R:5528340-5529144
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTATGATAAAAATTTTCAGACT
3' ss Score
3.6
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CCTGGTCGATGATCGCACAGTGGTGTGTCCCGAGGCCGGAGATCTCAGCTGTCCGCCTAAGAAGTTCAGGG
Seq A exon
ACTGCCTCATCAAAATATGCCCCATGAACCGCTATTCTGCGCAGAAGCAATTTTGGAAAGCAGCTAAGCAATCGGCCAGCTCCAATACGGATCCCAATCTCCTCAAGCGTTTGCAT
Seq C2 exon
CATGCGGCGGAGATCGAGAAGAAACAAAACGAGACGGAGAACAAGAAGCTGCTGGGCACCTCAATCCAATATGGACGAGCTGTGGTGCAGCTACTGCATTTGAAGTCCAACAAATATTTAACAGTTAACAAGCGACTGCCGTCGCTGCTGGAGAAGAATGCCATGCGCGTTTATCTGGATGCCAACGGGAACGAGGGGTCGTGGTTCTACATCAAGCCCTTCTACAAGCTTCGCTCCATCGGCGACTACGTGGTTGTTGGTGACAAGGTTATTTTGAGTCCGGTGAATGCGGATCAACAGAATCTCCATGTGGCAGCCAACTACGAACTGCCCGACAATCCCGGCTGCAAGGAGGTCAACGTTCTGAACTCGTCGACCTCCTGGAAGATCTCGCTGTTCATGGAACACAAGGAGAACCAGGAGCACATTCTCAAGGGCGGAGACGTGGTGCGTCTATTCCATGCCGAGCAGGAAAAGTTTCTCACCATGGACGAGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0010051-'10-4,'10-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(16.6=100)
C2:
PF087096=Ins145_P3_rec=PD(60.3=51.3),PF0281514=MIR=PU(59.1=47.2)
Main Inclusion Isoform:
FBpp0078335

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0078336, FBpp0310670
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCTCAGCTGTCCGCCTA
R:
TGATGTAGAACCACGACCCCT
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)