HsaEX6046719 @ hg38
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33640484-33658018:+
Coord C1 exon
chr6:33640484-33640554
Coord A exon
chr6:33655766-33655887
Coord C2 exon
chr6:33657932-33658018
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCAACCTGCCCCACCACAGACT
3' ss Score
5.8
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCTGGTGGATGACCGCTGTGTGGTGGAGCCCGCGGCCGGGGACCTGGACAACCCCCCTAAGAAGTTCCGTG
Seq A exon
ACTGCCTCTTCAAGGTGTGCCCCATGAACCGCTACTCGGCCCAGAAGCAGTACTGGAAGGCCAAGCAGACTAAGCAGGACAAGGAGAAGATCGCTGATGTGGTGTTGCTGCAGAAGCTGCAG
Seq C2 exon
CATGCGGCGCAGATGGAGCAGAAGCAAAATGACACGGAGAACAAGAAGGTGCATGGGGATGTCGTGAAGTATGGCAGTGTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'12-25,'12-21,22-25
Average complexity
S
Mappability confidence:
89%=92=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(17.5=100)
C2:
PF087096=Ins145_P3_rec=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATGACCGCTGTGTG
R:
TGGATCACACTGCCATACTTCAC
Band lengths:
154-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains