DreEX6049588 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21250718-21252753:+
Coord C1 exon
chr8:21250718-21250788
Coord A exon
chr8:21252348-21252469
Coord C2 exon
chr8:21252667-21252753
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTTTAAATGTAGACT
3' ss Score
7.13
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCTGGTGGATGACCGTTGTGTCGTGGAGCCTGCAAGTGGAGATTTAGAAAACCCTCCCAAAAAATTCAGAG
Seq A exon
ACTGCCTCTTTAAGGTGTATCCCATGAACAGATATTCGGCTCAGAAACAGTTCTGGAAAGCCAAACAGGCCAAACATGAAAAGGATAAAATTGGAGACATGGTGCTTCTTCAGAAATTGCAG
Seq C2 exon
CATGCAGCTAATTTGGAACAAAAGCAGAATGATGCTGAGAACAAAAAGGTCCACGGCGATGTGGTTAAATACGGCAGCGTCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'3-7,'3-4,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(11.2=100)
A:
PF087096=Ins145_P3_rec=FE(18.6=100)
C2:
PF087096=Ins145_P3_rec=FE(13.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGACCGTTGTGTCGTG
R:
CGCTGCCGTATTTAACCACAT
Band lengths:
146-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]