GgaEX1030905 @ galGal3
Exon Skipping
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4466667-4472049:-
Coord C1 exon
chr26:4471979-4472049
Coord A exon
chr26:4468521-4468642
Coord C2 exon
chr26:4466667-4466753
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCATCTTCCTCTCCTCCCAGATT
3' ss Score
10.96
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTGGTGGATGACCGATGCGTGGTGGAGCCGGCAGCTGGGGACCTGGACAACCCTCCCAAGAAGTTTCGAG
Seq A exon
ATTGCCTCTTCAAAGTGTGCCCCATGAACCGCTACTCAGCCCAGAAGCAGTACTGGAAGGCCAAGCAGACCAAGCAGGACAAGGAGAAGATCGCAGATGTGGTGCTGCTGCAGAAGCTCCAG
Seq C2 exon
CATGCAGCCCAGATGGAGCAGAAGCAGAACGAGACGGAGAACAAGAAGGTGCATGGGGACGTGGTGAAATATGGCAGCGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(17.5=100)
C2:
PF087096=Ins145_P3_rec=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATGACCGATGCGTG
R:
TGTATGACGCTGCCATATTTCACC
Band lengths:
154-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]