MmuEX6076268 @ mm10
Exon Skipping
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27073098-27085175:+
Coord C1 exon
chr17:27073098-27073168
Coord A exon
chr17:27083530-27083651
Coord C2 exon
chr17:27085089-27085175
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCTATCCCACCCAGATT
3' ss Score
7.64
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GCTGGTGGATGACCGTTGTGTGGTGGAACCTGCAGCTGGGGACCTGGACAACCCCCCCAAGAAGTTCCGAG
Seq A exon
ATTGCCTCTTCAAAGTGTGCCCCATGAACCGCTACTCTGCACAGAAACAGTACTGGAAAGCCAAGCAGACTAAACAGGACAAAGAGAAGATTGCTGATGTGGTATTGCTGCAGAAGCTGCAG
Seq C2 exon
CACGCAGCCCAGATGGAGCAGAAGCAAAATGACACAGAGAACAAGAAGGTGCACGGGGACGTGGTGAAGTACGGCAGCGTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-'6-2,'6-1,8-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(17.5=100)
C2:
PF087096=Ins145_P3_rec=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGACCGTTGTGTGGTG
R:
CGCTGCCGTACTTCACCAC
Band lengths:
146-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types