BtaEX6097016 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7701778-7718490:+
Coord C1 exon
chr23:7701778-7701848
Coord A exon
chr23:7716460-7716581
Coord C2 exon
chr23:7718404-7718490
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCCCTCACCCCCCAGACT
3' ss Score
10.72
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GTTGGTGGATGACCGCTGTGTGGTGGAGCCCGCGGCTGGTGACCTGGACAACCCCCCTAAGAAGTTCCGAG
Seq A exon
ACTGCCTCTTCAAGGTGTGTCCCATGAACCGCTACTCGGCCCAGAAGCAGTACTGGAAGGCCAAGCAGACCAAGCAGGACAAGGAGAAGATCGCCGACGTAGTGCTGCTGCAGAAGTTACAG
Seq C2 exon
CACGCAGCCCAGATGGAGCAGAAGCAGAACGACACGGAGAACAAGAAGGTGCACGGGGACGTCGTGAAGTACGGCAGCGTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(17.5=100)
C2:
PF087096=Ins145_P3_rec=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGACCGCTGTGTGG
R:
GTACTTCACGACGTCCCCG
Band lengths:
139-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]