RnoEX6061832 @ rn6
Exon Skipping
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5660807-5673300:+
Coord C1 exon
chr20:5660807-5660877
Coord A exon
chr20:5671816-5671937
Coord C2 exon
chr20:5673214-5673300
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCTATCCCACCCAGATT
3' ss Score
7.64
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GCTGGTGGATGACCGTTGTGTGGTGGAGCCTGCAGCTGGGGACCTGGACAACCCCCCCAAGAAGTTCCGAG
Seq A exon
ATTGCCTCTTCAAAGTGTGCCCCATGAACCGCTACTCCGCACAGAAGCAGTACTGGAAAGCCAAGCAGACTAAGCAGGACAAAGAGAAGATCGCCGATGTGGTGTTGCTGCAGAAGCTGCAG
Seq C2 exon
CATGCAGCCCAGATGGAGCAGAAGCAAAACGACACAGAGAACAAGAAGGTGCACGGGGACGTGGTGAAGTACGGCAGCGTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.5=100)
A:
PF087096=Ins145_P3_rec=FE(17.5=100)
C2:
PF087096=Ins145_P3_rec=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGACCGTTGTGTGGTG
R:
CGCTGCCGTACTTCACCAC
Band lengths:
146-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]