HsaEX6046719 @ hg19
Exon Skipping
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33608261-33625795:+
Coord C1 exon
chr6:33608261-33608331
Coord A exon
chr6:33623543-33623664
Coord C2 exon
chr6:33625709-33625795
Length
122 bp
Sequences
Splice sites
3' ss Seq
CCCAACCTGCCCCACCACAGACT
3' ss Score
5.8
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCTGGTGGATGACCGCTGTGTGGTGGAGCCCGCGGCCGGGGACCTGGACAACCCCCCTAAGAAGTTCCGTG
Seq A exon
ACTGCCTCTTCAAGGTGTGCCCCATGAACCGCTACTCGGCCCAGAAGCAGTACTGGAAGGCCAAGCAGACTAAGCAGGACAAGGAGAAGATCGCTGATGTGGTGTTGCTGCAGAAGCTGCAG
Seq C2 exon
CATGCGGCGCAGATGGAGCAGAAGCAAAATGACACGGAGAACAAGAAGGTGCATGGGGATGTCGTGAAGTATGGCAGTGTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-'3-7,'3-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.448
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(35.8=100),PF139001=GVQW=PU(24.3=36.0)
A:
PF087096=Ins145_P3_rec=FE(17.5=100)
C2:
PF087096=Ins145_P3_rec=FE(12.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATGACCGCTGTGTG
R:
TGGATCACACTGCCATACTTCAC
Band lengths:
154-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)