HsaEX0032576 @ hg19
Exon Skipping
Gene
ENSG00000123104 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:6181]
Coordinates
chr12:26877589-26943160:-
Coord C1 exon
chr12:26943090-26943160
Coord A exon
chr12:26878583-26878698
Coord C2 exon
chr12:26877589-26877675
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTGGTTTGTCACAGACT
3' ss Score
6.76
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTAGTGGATGACAGATGTGTGGTGCACCCAGAGGCCGGGGACCTTGCCAACCCTCCCAAGAAGTTCAGAG
Seq A exon
ACTGCCTTTTCAAGGTGTGCCCTATGAACAGATATTCTGCCCAGAAGCAATATTGGAAAGCAAAGCAAGCCAAACAAGGGAACCACACCGAGGCAGCCTTGCTGAAGAAACTACAG
Seq C2 exon
CACGCTGCAGAACTGGAACAAAAACAAAATGAATCGGAGAATAAGAAACTGTTGGGAGAAATTGTAAAATACAGTAATGTTATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123104-'5-8,'5-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(13.8=100)
A:
PF087096=Ins145_P3_rec=PD(24.3=22.5)
C2:
PF087096=Ins145_P3_rec=FE(16.1=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGTGGATGACAGATGTGTGGT
R:
ACTGTATTTTACAATTTCTCCCAACA
Band lengths:
146-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)