GgaEX1030873 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:68033734-68044295:-
Coord C1 exon
chr1:68044225-68044295
Coord A exon
chr1:68035102-68035217
Coord C2 exon
chr1:68033734-68033820
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCATTCTTCTACAGACT
3' ss Score
10.28
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTTAGTGGATGACAGATGTGTGGTTCAGCCGGATGCAGGTGACCTTGCCAACCCTCCCAAGAAGTTCAGAG
Seq A exon
ACTGCCTTTTCAAGGTGTGTCCTATGAACCGGTATTCAGCCCAGAAGCAGTACTGGAAAGCCAAACAAGCCAAACAAGGAAACCATACAGAAGCAGCACTGCTGAAGAAACTTCAA
Seq C2 exon
CACGCAGCAGAACTGGAACAAAAGCAGAATGAAAGCGAGAACAGAAAGCTGTTGGGCGAAATTGTAAAATACAGCAATGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'0-4,'0-2,2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.097 C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
PF087096=Ins145_P3_rec=PU(18.0=96.8)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGACAGATGTGTGGT
R:
ATTGCTGTATTTTACAATTTCGCCCA
Band lengths:
146-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]