GgaEX1030873 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:70045108-70055669:-
Coord C1 exon
chr1:70055599-70055669
Coord A exon
chr1:70046476-70046591
Coord C2 exon
chr1:70045108-70045194
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCATTCTTCTACAGACT
3' ss Score
10.28
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTTAGTGGATGACAGATGTGTGGTTCAGCCGGATGCAGGTGACCTTGCCAACCCTCCCAAGAAGTTCAGAG
Seq A exon
ACTGCCTTTTCAAGGTGTGTCCTATGAACCGGTATTCAGCCCAGAAGCAGTACTGGAAAGCCAAACAAGCCAAACAAGGAAACCATACAGAAGCAGCACTGCTGAAGAAACTTCAA
Seq C2 exon
CACGCAGCAGAACTGGAACAAAAGCAGAATGAAAGCGAGAACAGAAAGCTGTTGGGCGAAATTGTAAAATACAGCAATGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGACAGATGTGTGGT
R:
ATTGCTGTATTTTACAATTTCGCCCA
Band lengths:
146-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]