RnoEX0045380 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140272570-140373043:+
Coord C1 exon
chr4:140272570-140272640
Coord A exon
chr4:140362471-140362586
Coord C2 exon
chr4:140372957-140373043
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTGTTTCCCTTCTAGACT
3' ss Score
10.84
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
CTTGGTTGATGACCGTTGCGTTGTACAGCCAGAAGCTGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
Seq A exon
ACTGCCTCTTTAAGCTATGTCCTATGAATCGATATTCTGCACAGAAGCAGTTCTGGAAAGCTGCTAAGCCCGGGGCCAACAGTACAACAGATGCGGTGCTGCTCAACAAATTGCAT
Seq C2 exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGCTGGGGACGGTCATCCAGTATGGCAACGTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'12-10,'12-9,19-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(11.9=100)
A:
PF087096=Ins145_P3_rec=FE(18.8=100)
C2:
PF087096=Ins145_P3_rec=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATGACCGTTGCGTTGT
R:
TGGATCACGTTGCCATACTGG
Band lengths:
154-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]