DreEX0040322 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35715311-35738077:-
Coord C1 exon
chr11:35738007-35738077
Coord A exon
chr11:35716558-35716673
Coord C2 exon
chr11:35715311-35715397
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTCTTTCCTTCCAGACT
3' ss Score
11.47
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TCTGGTGGACGACCGCTGTGTGGTACAACCTGAATCTGGAGACCTGAACAACCCTCCTAAGAAGTTTCGAG
Seq A exon
ACTGTCAGTTCAGGTTGTGTCCCATGAACAGATACTCGGCCCAGAAACAGTTCTGGAAAGCAGCAAAGCCTGGTGGAAACAGCACCACAGACACTGTACTACTCAACAAACTACAC
Seq C2 exon
CATGCTGCAGATCTGGAGAAGAAGCAGAATGAATCGGAGAACCGTAAGCTGCTGGGAACGGTGATCCAGTATGGAAATGTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGACCGCTGTGTG
R:
CCATACTGGATCACCGTTCCC
Band lengths:
141-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]