HsaEX6054169 @ hg19
Exon Skipping
Gene
ENSG00000150995 | ITPR1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:HGNC Symbol;Acc:6180]
Coordinates
chr3:4562708-4681154:+
Coord C1 exon
chr3:4562708-4562778
Coord A exon
chr3:4669447-4669562
Coord C2 exon
chr3:4681068-4681154
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGCTTCACTTCTAGACT
3' ss Score
8.06
5' ss Seq
CACGTACGT
5' ss Score
8.98
Exon sequences
Seq C1 exon
CCTGGTTGATGATCGTTGTGTTGTACAGCCAGAAACCGGGGACCTTAACAATCCACCTAAGAAATTCAGAG
Seq A exon
ACTGCCTCTTTAAGCTATGTCCCATGAACCGCTACTCTGCCCAAAAGCAGTTCTGGAAAGCCGCTAAGCCTGGGGCCAACAGCACCACAGACGCAGTGCTACTCAACAAACTGCAC
Seq C2 exon
CACGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGCTGGGGACCGTAATCCAGTATGGCAATGTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150995-'3-8,'3-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTTGATGATCGTTGTGT
R:
TGGATCACATTGCCATACTGGA
Band lengths:
157-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)