GgaEX0012007 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19046140-19070578:+
Coord C1 exon
chr12:19046140-19046210
Coord A exon
chr12:19067675-19067790
Coord C2 exon
chr12:19070492-19070578
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTATTTCATTGTTTTTATAGATT
3' ss Score
8.56
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
CCTTGTGGATGACCGGTGTGTTGTACAGCCAGAAGCAGGTGACCTTAATAACCCACCCAAAAAGTTCAGAG
Seq A exon
ATTGCCTGTTCAAACTATGTCCCATGAACCGGTACTCTGCTCAAAAACAGTTCTGGAAAGCAGCAAAGCCAGGAGCCAACAGCACGACAGATGCAGTGCTGCTCAACAAGCTTCAC
Seq C2 exon
CATGCAGCCGATTTGGAAAAGAAGCAGAATGAAACTGAAAACAGAAAGCTGCTGGGAACAGTTATCCAGTATGGCAATGTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'3-5,'3-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGATGACCGGTGTGTTG
R:
TGGATCACATTGCCATACTGGA
Band lengths:
155-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]