MmuEX0024724 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108191258-108299678:+
Coord C1 exon
chr6:108191258-108191328
Coord A exon
chr6:108289501-108289616
Coord C2 exon
chr6:108299592-108299678
Length
116 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTGTTTCCCTTCTAGACT
3' ss Score
10.84
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CTTGGTTGATGACCGTTGTGTTGTACAGCCAGAAGCCGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
Seq A exon
ACTGCCTCTTTAAGCTATGTCCTATGAATCGATACTCCGCACAGAAACAGTTCTGGAAAGCTGCTAAGCCCGGGGCCAACAGCACTACAGATGCAGTGCTGCTCAACAAATTGCAT
Seq C2 exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGTTGGGGACCGTCATCCAATATGGCAACGTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'4-7,'4-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATGACCGTTGTGTTGT
R:
TGGATCACGTTGCCATATTGGA
Band lengths:
154-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types