DreEX6065823 @ danRer10
Exon Skipping
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27077631-27079588:+
Coord C1 exon
chr18:27077631-27077723
Coord A exon
chr18:27078139-27078268
Coord C2 exon
chr18:27079452-27079588
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTATATATCTGTGTTTTAGGTT
3' ss Score
11.69
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTGCTCCTTTTTCAATTCCAACGCTGTACCTCTAAAGATCGCACTGGTTAACGCAGATCCGCTGGGAGATGAGATTAACGTCATGTTTAAG
Seq A exon
GTTGGAGAAGACCTGCGGCAGGACATGTTGGCACTACAGATGATTCGGATTATGGATCGGATCTGGCTTCAGGAAGGACTCGACCTGCGTATTGTTAACTTTAAATGCATCTCTACTGGGAAAGATAAAG
Seq C2 exon
GCATGGTGGAGTTGGTACCATCTTCTGAAACGCTGAGAAAGATTCAGGTGGAGTATGGAGTGACGGGTTCCTTCAAGGACAAACCTCTTGCTGAGTGGCTTCGCAAGTATAACCCTGCTGAGGATGAGTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841-'26-29,'26-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
A:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCTTTTTCAATTCCAACGC
R:
TCTCATACTCATCCTCAGCAGGG
Band lengths:
226-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]