HsaEX6000994 @ hg38
Exon Skipping
Gene
ENSG00000011405 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr11:17105169-17112666:-
Coord C1 exon
chr11:17112574-17112666
Coord A exon
chr11:17110432-17110561
Coord C2 exon
chr11:17105169-17105305
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCCTTGATTTCAAGGTT
3' ss Score
7.95
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TCGTGTTCCTTCTTCAGTTCTAATGCTGTCCCCCTAAAAGTCACAATGGTGAATGCTGACCCTATGGGAGAAGAAATTAATGTCATGTTTAAG
Seq A exon
GTTGGTGAAGATCTTCGGCAAGATATGTTAGCTTTACAGATGATAAAGATTATGGATAAGATCTGGCTTAAAGAAGGACTAGATCTGAGGATGGTAATTTTCAAATGTCTCTCAACTGGCAGAGATCGAG
Seq C2 exon
GCATGGTGGAGCTGGTTCCTGCTTCCGATACCCTCAGGAAAATCCAAGTGGAATATGGTGTGACAGGATCCTTTAAAGATAAACCACTTGCAGAGTGGCTAAGGAAATACAATCCCTCTGAAGAAGAATATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405-'54-53,'54-51,56-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
A:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTTCCTTCTTCAGTTCTAATGC
R:
TTCATATTCTTCTTCAGAGGGATTGT
Band lengths:
226-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains