RnoEX0065931 @ rn6
Exon Skipping
Gene
ENSRNOG00000020479 | Pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:RGD Symbol;Acc:1310389]
Coordinates
chr1:185307446-185312168:+
Coord C1 exon
chr1:185307446-185307538
Coord A exon
chr1:185310292-185310421
Coord C2 exon
chr1:185312032-185312168
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTATTTCCTTAATTTAAAGGTT
3' ss Score
9.05
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TCATGCTCATTCTTCAGTTCGAATGCCATGCCTCTGAAAGTCACAATGGTGAATGCTGATCCTCTGGGAGAAGAAATTAATGTCATGTTTAAG
Seq A exon
GTTGGTGAAGATCTTCGGCAAGATATGTTAGCTTTACAGATGATAAAGATTATGGATAAGATCTGGCTTAAAGAGGGCCTGGATCTGAGGATGGTGATATTCAAATGCCTGTCGACTGGCCGAGATCAAG
Seq C2 exon
GCATGGTGGAGCTAGTTCCTGCCTCAGACACTCTCAGGAAAATCCAAGTGGAATATGGTGTGACAGGATCCTTTAAAGATAAACCACTTGCTGAATGGCTAAGGAAATACAACCCTTCTGAAGAAGAATATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020479-'33-43,'33-41,35-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
A:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Main Skipping Isoform:
ENSRNOT00000055120fB10710
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCTCATTCTTCAGTTCGA
R:
TTCTTCAGAAGGGTTGTATTTCCT
Band lengths:
218-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]