GgaEX6037052 @ galGal3
Exon Skipping
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12854356-12857015:-
Coord C1 exon
chr5:12856923-12857015
Coord A exon
chr5:12856050-12856179
Coord C2 exon
chr5:12854356-12854492
Length
130 bp
Sequences
Splice sites
3' ss Seq
ACTTCTGTATTTCCATTAAGGTT
3' ss Score
8.48
5' ss Seq
GAGGTGCAA
5' ss Score
-0
Exon sequences
Seq C1 exon
GCATGCTCCTTCTTCAGCTCCAATGCAGTACCACTGAAAATTGCACTGATAAATGCAGACCCTCTGGGAGAAGAAATTAATGTGATGTTTAAG
Seq A exon
GTTGGAGAAGATCTGCGACAAGATATGTTGGCTTTACAGATGATTAAGATCATGGATAAGATCTGGCTGCAGGAGGGACTGGATCTACGGATGGTTATCTTCAAGTGTCTCTCAACTGGAAAGGATCGAG
Seq C2 exon
GTATGGTAGAACTTGTTCCTGCATCGGAAACACTTAGGAAAATTCAAGTGGAATATGGAGTGACAGGTTCTTTTAAAGACAAGCCTCTGGCAGAATGGTTGCGAAAGTATAATCCTACAGAGGAGGAATACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121-'25-26,'25-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
A:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTCCTTCTTCAGCTCC
R:
CTTTTCGTATTCCTCCTCTGTAGG
Band lengths:
230-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]