MmuEX0035113 @ mm10
Exon Skipping
Gene
ENSMUSG00000030660 | Pik3c2a
Description
phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide [Source:MGI Symbol;Acc:MGI:1203729]
Coordinates
chr7:116353978-116358728:-
Coord C1 exon
chr7:116358636-116358728
Coord A exon
chr7:116356235-116356364
Coord C2 exon
chr7:116353978-116354114
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCCTTAATTTCAAGGTT
3' ss Score
8.65
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCATGTTCGTTCTTCAGTTCTAATGCTATGCCTCTGAAAGTCACAATGGTGAATGCTGACCCTCTGGGGGAAGAAATTAATGTCATGTTTAAG
Seq A exon
GTTGGTGAAGATCTTCGGCAAGATATGTTAGCTTTACAGATGATAAAGATTATGGATAAGATCTGGCTTAAAGAGGGACTGGATCTGAGGATGGTGATATTCAGATGCCTGTCAACTGGCCGAGATCGAG
Seq C2 exon
GCATGGTGGAGCTAGTTCCTGCTTCAGATACCCTCAGGAAAATCCAAGTGGAATATGGTGTAACAGGATCCTTTAAAGATAAACCACTTGCTGAGTGGCTGAGGAAATACAATCCTTCTGAAGAAGAATATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030660-'39-50,'39-49,40-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PU(2.8=19.4)
A:
PF0045422=PI3_PI4_kinase=FE(19.9=100)
C2:
PF0045422=PI3_PI4_kinase=FE(20.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTCGTTCTTCAGTTCTAATGC
R:
TTCTTCAGAAGGATTGTATTTCCTCA
Band lengths:
218-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types