DreEX6068029 @ danRer10
Exon Skipping
Gene
ENSDARG00000024560 | slc4a1b
Description
solute carrier family 4 (anion exchanger), member 1b (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-110215-2]
Coordinates
chr12:10053585-10060223:+
Coord C1 exon
chr12:10053585-10053674
Coord A exon
chr12:10053885-10054051
Coord C2 exon
chr12:10059982-10060223
Length
167 bp
Sequences
Splice sites
3' ss Seq
ACCTTTGACTTGTGTCACAGAAA
3' ss Score
7.94
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATTCGACGTTTGCTTGGTGACTTTGGAGTTCCCATTGCAATTTTCCTCATGGCTGCCATTGATATCAACATTGAGGATACATACACTCAG
Seq A exon
AAACTGGTGGTGCCTAAAGGTCTTCAGGTGTCCAACCCTAGCATGCGGGGCTGGTTAATCAACCCATTTGGTGAGCATAAGAGTTTCCCCGTGTGGATGATGTTCGCCTCTATTGTCCCAGCTATCTTGGTCTTCATCCTCATTTTCCTTGAGTCTCAGATCACCAC
Seq C2 exon
GCTAATTGTAAGTAAACCAGAGAGAAAAATGGTCAAGGGTTCTGGCTTCCACATGGATCTTCTCATCCTGGTGAGCATGGGGGGTCTGAGTGCCTTTTTTGGCATTCCTTGGTTGAGTGCCGCCACTGTACGATCTGTATCTCATGCCAACGCTCTGACGGTCATGAGTAAGGGCCCAAAACCTGAGATCGAGAAAGTTCTGGAACAGAGAGTCAGTGGTGTAGTGGTGGCTTTGCTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024560-'14-18,'14-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(5.8=100)
A:
PF0095516=HCO3_cotransp=FE(11.1=100)
C2:
PF0095516=HCO3_cotransp=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTTTCCTCATGGCTGCC
R:
CTCGATCTCAGGTTTTGGGCC
Band lengths:
247-414
Functional annotations
There are 1 annotated functions for this event
PMID: 10364201
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: not specified. ELM ID: ELMI000605; ELM sequence: SNSSAR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]