DreEX6069472 @ danRer10
Exon Skipping
Gene
ENSDARG00000054903 | mta3
Description
metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
Coordinates
chr12:25163304-25167958:+
Coord C1 exon
chr12:25163304-25163403
Coord A exon
chr12:25163502-25163690
Coord C2 exon
chr12:25167884-25167958
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTGGCTTTCTGAAGTTT
3' ss Score
5.37
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
AGCGGTTGGTACGTTTGCCCGGGCGTTGGACTGCAGCAGCTCCGTCAGACAGCCCAGCTTACACATGAGCGCCGCGGCAGCCTCACGAGACATCACACTG
Seq A exon
TTTCACGCTATGGACACACTGCATCGGCATGGCTATGACCTGTCCAGTGCTCTCAGCGTTCTTGTTCCTCAAGGTGGGCCAGTCCTGTGCCGGGATGAGATGGAGGAGTGGAGCTCGTCAGAGGCCAATCTGTTTGAAGAGGCCCTGGAGAAATACGGCAAAGACTTCAACGATATACGGCAAGATTTT
Seq C2 exon
CTTCCCTGGAAGTCGCTGACCAGCATCATTGAGTATTATTACATGTGGAAAACCACAGACAGATACGTTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054903-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGTTGGTACGTTTGCC
R:
GCTGAACGTATCTGTCTGTGGT
Band lengths:
173-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]