GgaEX1037294 @ galGal3
Exon Skipping
Gene
ENSGALG00000009925 | MTA3
Description
NA
Coordinates
chr3:25170274-25182076:+
Coord C1 exon
chr3:25170274-25170373
Coord A exon
chr3:25176523-25176711
Coord C2 exon
chr3:25182002-25182076
Length
189 bp
Sequences
Splice sites
3' ss Seq
CACTCTCTCCTTCTTCCTAGTTT
3' ss Score
8.49
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGCGGTTGGCACATTTGCTCGGGCATTGGACTGCAGTAGTTCTGTCAGGCAACCTAGTTTACACATGAGTGCAGCTGCTGCTTCCCGAGACATCACACTG
Seq A exon
TTTCATGCAATGGATACGTTGCATAAACATAACTATGATTTGAGCAGTGCCATCAGTGTCCTAGTGCCACTTGGAGGACCTGTCTTGTGTAGAGATGAAATGGAAGAATGGTCAGCATCAGAAGCTAGTTTGTTTGAAGAGGCATTGGAAAAATATGGAAAGGACTTCAATGATATTCGACAAGACTTT
Seq C2 exon
CTCCCTTGGAAGTCGCTGACTAGTATCATTGAATATTACTACATGTGGAAAACTACTGACAGATATGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925-'19-26,'19-23,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATTGGACTGCAGTAGTT
R:
CTGCTGCACATATCTGTCAGT
Band lengths:
155-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]