MmuEX6079662 @ mm10
Exon Skipping
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:83766507-83781976:+
Coord C1 exon
chr17:83766507-83766606
Coord A exon
chr17:83775582-83775770
Coord C2 exon
chr17:83781902-83781976
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTTTGTCTCCTCCAGTTT
3' ss Score
10.65
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGCCGTGGGAACATTTGCCCGAGCCCTGGACTGCAGCAGCTCCGTGAGGCAACCCAGCCTTCACATGAGTGCAGCCGCAGCCTCCCGAGACATCACCTTG
Seq A exon
TTTCATGCCATGGACACACTGTACAGGCACGGCTATGACCTCAGCAGCGCCATCAGTGTGCTGGTGCCGCTCGGAGGGCCAGTCCTCTGCAGGGACGAGATGGAGGAGTGGTCGGCCTCTGAAGCCTGCCTATTCGAAGAAGCACTGGAAAAATACGGCAAAGATTTCAACGACATTCGTCAGGACTTT
Seq C2 exon
CTCCCGTGGAAATCCTTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATACGTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-'32-23,'32-21,34-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.6=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGAACATTTGCCCGAG
R:
CTGCTGCACGTATCTGTCAGT
Band lengths:
172-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types