HsaEX0040401 @ hg19
Exon Skipping
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:23784]
Coordinates
chr2:42886903-42922979:+
Coord C1 exon
chr2:42886903-42887002
Coord A exon
chr2:42909541-42909729
Coord C2 exon
chr2:42922905-42922979
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTTCATTTTGTTTCTTTAGTTT
3' ss Score
8.88
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
TGCTGTTGGGACATTCGCCAGAGCCCTGGATTGCAGCAGTTCTGTGAGGCAGCCTAGTTTGCATATGAGTGCTGCTGCAGCTTCCCGAGACATCACCTTG
Seq A exon
TTTCACGCTATGGATACATTGTATAGACACAGCTATGATTTGAGCAGTGCCATTAGTGTCTTAGTACCACTCGGAGGACCTGTTTTATGCAGAGATGAAATGGAGGAATGGTCAGCCTCTGAAGCTAGCTTATTTGAAGAGGCACTGGAAAAATATGGCAAAGACTTCAATGACATACGGCAAGATTTT
Seq C2 exon
CTTCCTTGGAAATCATTGACTAGCATCATTGAATATTATTACATGTGGAAAACTACTGACAGATATGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935_MULTIEX3-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0144819=ELM2=PD(5.5=8.8)
A:
PF0024926=Myb_DNA-binding=PU(61.7=46.0)
C2:
PF0024926=Myb_DNA-binding=PD(34.0=64.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGGGACATTCGCCAGAG
R:
TGTTGCACATATCTGTCAGTAGT
Band lengths:
172-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)