DreEX6071727 @ danRer10
Exon Skipping
Gene
ENSDARG00000059067 | jupb
Description
junction plakoglobin b [Source:ZFIN;Acc:ZDB-GENE-110407-10]
Coordinates
chr19:5607522-5625567:+
Coord C1 exon
chr19:5607522-5607618
Coord A exon
chr19:5623473-5623509
Coord C2 exon
chr19:5625421-5625567
Length
37 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTGTTTCCTCACAGCTT
3' ss Score
11.15
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GCTCTGCTTCCCCTGATGGTGTGACTTACGCTCAGATGCTTGATAAAGACGACGGAGCCGGATGGATTTTTGCTAAGATCTGTCAACATGATTGACG
Seq A exon
CTTGATTGAGGCCTGACAGTGGTGATGTCACTGCAAA
Seq C2 exon
TGAGTGAGGCTGATGGAGCAGTGAAGGTGGAGGAGTGGCAGCAGAGCTTCTACACCGCAGACTCAGGCATTCAGTCTGGAGCCACGACCATCAGGGATGAGGACGAGTCTGAGAGCAGGAAGTACAGCGCTGGAGAGAGCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059067-'2-2,'2-1,3-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.800 C2=0.620
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGATGGTGTGACTTACGC
R:
TCCACCTTCACTGCTCCATCA
Band lengths:
118-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]