DreEX6072789 @ danRer10
Exon Skipping
Gene
ENSDARG00000033251 | osbpl3a
Description
oxysterol binding protein-like 3a [Source:ZFIN;Acc:ZDB-GENE-040912-77]
Coordinates
chr19:20434383-20438710:+
Coord C1 exon
chr19:20434383-20434468
Coord A exon
chr19:20434543-20434674
Coord C2 exon
chr19:20438617-20438710
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTATCTTCTCGCCTAATCAGGAC
3' ss Score
9.51
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
TTCATTCCACTCTTCGGTCAGCGTACTCTTTACTTTGCTCCGAGAGAGACAGAGTCAAGAACACACTGGATTTTATCAGTGAGAAG
Seq A exon
GACGTCTTTGATGGGTCACGGCCTTTGCTGCAGCAAATGTCTAGTGAGAGCCGAGGGTCAATCCCAGAATCCATGTCAGAGTTCTTTGATGCTAAAGAGTACCTGCTGTCTGGCAGCTCATCTGATAATGAG
Seq C2 exon
GTGTCTGATGATGATTCTTACGTCAGTGATGTAAGCGACAGTACATCAGTAGAGTTTTGCAGGAATGAGAATGGCAACATGAGGGAGATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033251-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.386 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCACTCTTCGGTCAGCG
R:
CAAAAATCTCCCTCATGTTGCCA
Band lengths:
178-310
Functional annotations
There are 1 annotated functions for this event
PMID: 17804640
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, confocal microscopy, cross linking study, detection by mass spectrometry, green fluorescent protein tag. ELM ID: ELMI001270; ELM sequence: DSLSEFFDAQE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]