DreEX6073049 @ danRer10
Exon Skipping
Gene
ENSDARG00000062352 | sema4ab
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
Coordinates
chr19:24800441-24807826:+
Coord C1 exon
chr19:24800441-24800604
Coord A exon
chr19:24800760-24800848
Coord C2 exon
chr19:24804097-24807826
Length
89 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTGCTGCTCTTGCAGGGC
3' ss Score
10.28
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGGGCAGTGCTGATCGGCTCTTCAGAAGGGCTGCTGTCAGTGCCAGTGTCCAACTGCTCTCACTACAGGAGCTGTGCTGAATGTGTTCTGGCCAGAGACCCTTTCTGTGGCTGGGACCTTTCCCAGAGGGTCTGCAAACTGATAACCACATCACAGAATCAGCT
Seq A exon
GGCTCAGGATGTAGATGAGGGTAAAGTATCAGAGCAGTGCTCCAGTGTGAACCTCAGATCCCGCTCTGGCCAGCCCCAAAACACCCAGA
Seq C2 exon
GTGAAGTGCTGTCTGTGTCACTCAATGAGGTTATTAACCTACAATGCCCCGAAGCATCAAACCTTGCTAAATGCCACTGGGAGCGTCTCAACAGCCAGCTCTCCCCCAAAATCTTCATCCAGTCAGTCAACGGCAGCCTCAGCTTTGTGGCGACCCCGTCCACCCTGGGCCACTACCTGTGCCAAGCGGTGGAGAACGGCTACACCCAAACACTGATAGTCTACCATATTAAACAGAAGAACAATCCCACCATCCTCCCGTCTTCCCCGAAGATCACACCGACTTCCGCTGAAGCTGGAAACAAAACCCCTTTTTCCACTCCCACAGCTCCCAAACACACCGAGCTGAGGCCTAAACCAGAAGACCCAAGTTCTACTGTTGCACACAAAGATTCACCTGCAACCACCACACGGAAAAGCAAAAACTTCACTCCCTTGATTAGTGCAGAAGAGGAAAGCTCCTGGATGAATGAACGCAGTGGAAACTTCAAGCAAGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062352-'15-19,'15-17,16-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.131 C2=0.554
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(0.1=0.0),PF0143720=PSI=PU(54.4=66.1)
A:
PF0143720=PSI=FE(44.1=100),PF138951=Ig_2=PU(6.5=19.4)
C2:
PF0143720=PSI=PD(0.1=0.0),PF138951=Ig_2=PD(92.4=30.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATGTGTTCTGGCCAGA
R:
GACGCTCCCAGTGGCATTTAG
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]