RnoEX6010212 @ rn6
Exon Skipping
Gene
ENSRNOG00000019737 | Sema4a
Description
semaphorin 4A [Source:RGD Symbol;Acc:1304636]
Coordinates
chr2:187799568-187801869:-
Coord C1 exon
chr2:187801712-187801869
Coord A exon
chr2:187801367-187801464
Coord C2 exon
chr2:187799568-187800804
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCCTTGTCTTCTCAGGAC
3' ss Score
9.91
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GGTGCAGTGTTCGCAGGCTTCTCTGAAGGCATCTGGAGGGTTCCCAGGGCCAACTGCAGTGTCTATAAGAGCTGTGTGGACTGTGTCCTTGCCAGGGACCCTCACTGTGCCTGGGACCCTGAATCAAGACTGTGCAGCCTTCTGTCTGGCTCTCCCCT
Seq A exon
GACTTGGAAGCAGGACATGGAACGCGGCAACCCGGAGTGGGCATGCGCCCGTGGCCCCATGGCCAGGAGCCCCCGGCGTCAGAGCTCCCCTCAACTCA
Seq C2 exon
TTAAAGAAGTCCTGACAGTCCCCAACTCCATCCTGGAGCTGCCCTGCCCCCAGCTGTCAGCACTGGCCTCTTACCACTGGAGTCACGGCAAAGCCAAAATCCCAGAAGCCTCTTCTACTGTCTATAATGGCTCCCTCTTGTTGCTGCCACAGGATGGCGTTGGGGGCCTCTACCAGTGCGTGGCCACTGAAAACGGCTATTCGTACCCTGTAGTCTCCTACTGGGTAGACAGCCAGGACCAGCCCCTGGCACTGGATCCTGAGCTGGCGGGCGTTCCCCGGGAGCGAGTGCAGGTCCCACTGACCAGGGTCGGAGGCGGGGCTTCTATGGCTGCCCAGCGGTCCTACTGGCCCCATTTTCTCATCGTTACTGTCCTCCTGGCCATTGTGCTCTTGGGAGTGCTCACTCTCCTCCTTGCTTCCCCACTGGGAGTGCTTCGGGCTCGGGGTAAGGTTCAGGGCTGTGGGATGCTGCCCCCCAGGGAAAAGGCCCCACTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019737-'27-34,'27-31,29-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.456 C2=0.178
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(62.5=66.0)
A:
PF0143720=PSI=PD(35.7=58.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGAAGGCATCTGGAGGG
R:
GAGTTGGGGACTGTCAGGACT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]