DreEX6073903 @ danRer10
Exon Skipping
Gene
ENSDARG00000009194 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:38939416-38942970:-
Coord C1 exon
chr19:38942920-38942970
Coord A exon
chr19:38942713-38942844
Coord C2 exon
chr19:38939416-38939451
Length
132 bp
Sequences
Splice sites
3' ss Seq
CAATGTGACTTATTTTTAAGGGG
3' ss Score
6.1
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGTGACACTGGCCTACCTGGTATAGGGACACCTGGTCTAAAAGGTGAAAAG
Seq A exon
GGGGACTCGTGTGGGGCATGCCAGTCCTCTCCCTCTGAAGTGGGAAGTGGCCCACCTACAATAAAATTGACAGGAGAACGTGGACCTCCAGGACCCGCAGGCCCACCAGGAGAAGGAGCTGAGGGCAAACAG
Seq C2 exon
GGGCCACCAGGTCTTCAAGGATTCAAAGGAGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194-'32-33,'32-32,33-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.6=100)
A:
PF0139113=Collagen=PD(12.3=18.2),PF0139113=Collagen=PU(9.8=13.6)
C2:
PF0139113=Collagen=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACACTGGCCTACCTGGTA
R:
TCTCCTTTGAATCCTTGAAGACCTG
Band lengths:
82-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]