HsaEX6029691 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32150422-32151736:-
Coord C1 exon
chr1:32151692-32151736
Coord A exon
chr1:32151240-32151371
Coord C2 exon
chr1:32150422-32150457
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCCTTGCTTGGCAGGGG
3' ss Score
7.69
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGCCACCAGGACCAGTGGGGCCAGCAGGCATCAAAGGGGCGAAG
Seq A exon
GGGGAGCCCTGTGAGCCGTGCCCAGCCCTGTCCAACCTTCAGGATGGGGATGTCCGTGTGGTGGCCTTGCCTGGCCCATCCGGAGAGAAGGGGGAACCTGGGCCTCCAGGCTTTGGCTTGCCAGGAAAACAG
Seq C2 exon
GGCAAGGCTGGAGAGCGTGGACTGAAGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'36-40,'36-38,37-40=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.977 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.9=100)
A:
PF0139113=Collagen=PD(9.5=13.6),PF0139113=Collagen=PU(46.7=63.6),PF0139113=Collagen=PU(9.7=13.6)
C2:
PF0139113=Collagen=FE(18.3=100),PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)