GgaEX6047707 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrUn_random:29709386-29709797:+
Coord C1 exon
chrUn_random:29709386-29709439
Coord A exon
chrUn_random:29709565-29709681
Coord C2 exon
chrUn_random:29709762-29709797
Length
117 bp
Sequences
Splice sites
3' ss Seq
GAGCGCTCTGTCCCTCGCAGGGT
3' ss Score
8.56
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGGCTCCCTGGGAGCAAGGGTGATCCAGGTGTGCGGGGGCTCAAAGGAGAGAAG
Seq A exon
GGTGAGCCGTGTGGACAGTGTCCCTCAGCTCCACAGGCACTGGAAGGGGCAGCAACAACGGTGGCTGTGCCCGGAGCACCGGGACCACAGGGCAGGGATGGTCCCCCTGGCAGAGCA
Seq C2 exon
GGCAAGCCTGGTGATGCTGGCCAGAAAGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022292-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100)
A:
PF0139113=Collagen=PD(22.5=41.0),PF0139113=Collagen=PU(37.0=87.2)
C2:
PF0139113=Collagen=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGGAGCAAGGGTG
R:
GCCCTTTCTGGCCAGCATC
Band lengths:
82-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]