HsaEX6029691 @ hg38
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr1:31684821-31686135:-
Coord C1 exon
chr1:31686091-31686135
Coord A exon
chr1:31685639-31685770
Coord C2 exon
chr1:31684821-31684856
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCAATGTCCTTGCTTGGCAGGGG
3' ss Score
7.69
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGGCCACCAGGACCAGTGGGGCCAGCAGGCATCAAAGGGGCGAAG
Seq A exon
GGGGAGCCCTGTGAGCCGTGCCCAGCCCTGTCCAACCTTCAGGATGGGGATGTCCGTGTGGTGGCCTTGCCTGGCCCATCCGGAGAGAAGGGGGAACCTGGGCCTCCAGGCTTTGGCTTGCCAGGAAAACAG
Seq C2 exon
GGCAAGGCTGGAGAGCGTGGACTGAAGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'45-51,'45-48,47-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.985 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.2=100)
A:
PF0139113=Collagen=PD(9.5=13.6),PF0139113=Collagen=PU(46.7=63.6),PF0139113=Collagen=PU(9.7=13.6)
C2:
PF0139113=Collagen=FE(18.3=100),PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains