MmuEX6096392 @ mm10
Exon Skipping
Gene
ENSMUSG00000040690 | Col16a1
Description
collagen, type XVI, alpha 1 [Source:MGI Symbol;Acc:MGI:1095396]
Coordinates
chr4:130065040-130066216:+
Coord C1 exon
chr4:130065040-130065084
Coord A exon
chr4:130065374-130065505
Coord C2 exon
chr4:130066181-130066216
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCAATATCCTTGCTCTGCAGGGG
3' ss Score
7.93
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGATCACCAGGACCAGTGGGACCAGCTGGCATCAAAGGGGCAAAG
Seq A exon
GGGGAGCCCTGTGAGCCCTGCACAGCCTTGTCTGAGCTACAAGATGGGGACATGCGTGTGGTTCATCTGCCCGGCCCAGCTGGAGAGAAGGGAGAGCCTGGGTCCCCGGGCTTCGGGCTGCCTGGGAAGCAG
Seq C2 exon
GGTAAAGCAGGAGAGCGTGGACTCAAGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040690-'44-48,'44-45,45-48=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.2=100)
A:
PF0139113=Collagen=PD(12.7=18.2),PF0139113=Collagen=PU(40.7=50.0),PF0139113=Collagen=PU(9.7=13.6)
C2:
PF0139113=Collagen=FE(20.4=100),PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types