DreEX6074422 @ danRer10
Exon Skipping
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44747447-44753025:-
Coord C1 exon
chr19:44752816-44753025
Coord A exon
chr19:44750937-44751125
Coord C2 exon
chr19:44747447-44747624
Length
189 bp
Sequences
Splice sites
3' ss Seq
GCTTGTTTGTTTTTCTTTAGCCT
3' ss Score
7.3
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
GAATCCATGTCCAGTTCCTGAACTTCTCCACTGAGGCAATTCATGATTACCTGGAGATCCGAAGCGGGCCCAGTGAGACCGGCACAGTGATCGACCGCTTCAGTGGACCACAGGTTCCTGAGTCGCTCTTTAGCACCACTCATGAAACCAGCTTCTTCTTCCACAGCGACTATTCTCAGAATAAACCCGGATTTCACATTACATACCAAG
Seq A exon
CCTACCAGCTGCAGAGTTGTCCTGACCCCCGACCTTTCAGGAACGGTATTGTAATCGGCAGTGACTTCAGCGTGGGCATGACGGTGTCTTTCGAGTGTTTACCCGGTTACTCTCTGATCGGCGAGACCTCTTTAACCTGCCTGCATGGAATCAGCAGGAACTGGAACAACCCCATACCACGCTGTGAAG
Seq C2 exon
CTCTATGCGGTGGAAACATCACCTCCATGAATGGCACCATCTTCTCTCCGGGACACCCAGCCGAATACCCCAATTTCCAGGACTGCGTCTGGAGCGTCCGAGTGCCTCCTGGAAACGGCATCTATATCAACTTCACTGTGCTCAGCACTGAACCCATCTACGACTACATCACTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(65.1=97.2)
A:
PF0008415=Sushi=WD(100=87.5)
C2:
PF0043115=CUB=PU(53.8=93.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACTTCTCCACTGAGGC
R:
TGTCCCGGAGAGAAGATGGTG
Band lengths:
249-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]