DreEX6079807 @ danRer10
Exon Skipping
Gene
ENSDARG00000059987 | dnah12
Description
dynein, axonemal, heavy chain 12 [Source:ZFIN;Acc:ZDB-GENE-090311-9]
Coordinates
chr23:19623807-19624367:-
Coord C1 exon
chr23:19624232-19624367
Coord A exon
chr23:19624027-19624152
Coord C2 exon
chr23:19623807-19623941
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCAAACCGACTTTTTCTAGGAA
3' ss Score
7.04
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GATTTGTGAAGAGTTTGAGGCCATCAGAGACAGAGCTTTGAAAGTCCCTGAAACGACAGAGGAAATGATGGAAATGATTACTTACATTAATCAGGTGAAAACCAAAGGAATAGAGGAGCTCAACAATAGGATAATG
Seq A exon
GAAGCACAACAAAGGATGAATTATTTGATGGATGTCCATATTTTTAATGAGGAGCACCTTGATCTGAACACCACAGTACTGCTCTGGCCACAAAACATAAACCCGATCTTCGATCAAAGTGATGAG
Seq C2 exon
GTGATGGATGAAGCCAAGCTAAAGGGTCAAAATGATCTTTCTGGTCGAAGAGAAAAGCTGCTGCTGGAACTCGACAAAGTAGGCCGCAGGATGGAGGAATTTGCTGAGTGCTCTGAACTCGATATGATTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059987-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATCAGAGACAGAGCTT
R:
ATCGAGTTCAGAGCACTCAGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]