MmuEX6040124 @ mm9
Exon Skipping
Gene
ENSMUSG00000021879 | Dnahc12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:27537395-27543117:+
Coord C1 exon
chr14:27537395-27537530
Coord A exon
chr14:27541574-27541699
Coord C2 exon
chr14:27542983-27543117
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATCTAGAGTTTCTTTTGTAGGAA
3' ss Score
4.88
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TATTTGCAGTGAATTTGAAGCAATTAGAGACCATGCGCTACGAGTTCCTGAGACCACAGAAGAAATGATGGAGCTAATTGCTTTCGTAGAAAGAGCTCGAACCGTAGGAATTCTTGACTTGGCTCTAAGGATCCAG
Seq A exon
GAATCTAAACGCCAAATGAGTTACTTTTTAGATGCTCTTCTAATGTCTCAAGAAGACTTAAATTTAAATGCAACTGTCCTCTTGTGGCCTACTAAAATTACCCCTGTCTTTGATGAGAATGATGAA
Seq C2 exon
CTCATTGAGAATGCTAAACATGCAAAAGAAAATGAACTAATAGCCAAGAGAGAAAAACTGATTTTGGAAATAGAAAAAGAATCACGTCGCATGGAGGAGTTCACCGAGTTTGCAGAACTGGACCGCATGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCATGCGCTACGAGTTC
R:
GATGCATGCGGTCCAGTTCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: