RnoEX0028470 @ rn6
Exon Skipping
Gene
ENSRNOG00000059865 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:RGD Symbol;Acc:619990]
Coordinates
chr16:2397621-2409285:+
Coord C1 exon
chr16:2397621-2397756
Coord A exon
chr16:2407858-2407983
Coord C2 exon
chr16:2409151-2409285
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTATTGTCTTCTTTTGTAGGAA
3' ss Score
10.95
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TATTTGCAGTGAATTTGAAACAATTAAAGAGCATGCTCTACGAGTTCCTGAGACAACAGAAGAAATGATGGAACTAATTGCTTTCATAGAAAAAGCTCGAACCACAGGAATTCAGAACTTGGCTCAAAGGATCCAG
Seq A exon
GAATCTAAACGCCAAATGGGTTACTTTTTAGATACTTTTCTATTGTCTCAAGAAGATTTAAATTTAAATGCAAGTGTCCTCTTGTGGCCTAGTAAAATTAACCCCGTCTTTGATGAGAATGATGAA
Seq C2 exon
CTCATTGAGAATTCTAAACGTACGAAAGAAAATGAACTAATAGCCAAGAGAGAGAAACTGATTTTGGAAATAGAAAAAGAGTCGCGCCGCATGGAGGAGTTCACAGAGTTTGCAGAACTGGACCGCATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059865_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATGCTCTACGAGTTCCTG
R:
CTGTTGCATGCGGTCCAGTTC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]