GgaEX6010280 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:8938282-8939926:-
Coord C1 exon
chr12:8939791-8939926
Coord A exon
chr12:8939197-8939322
Coord C2 exon
chr12:8938282-8938416
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTGTGAAATCCCTATTATAGGAG
3' ss Score
6.37
5' ss Seq
GATGTAAGG
5' ss Score
6.35
Exon sequences
Seq C1 exon
GATATGCAGGGAATTTGAAGCAATTAAAGAACGTGCGTTAAAAGTTCCAGAGAGCACAGAAGAAATGGTTGAAACAATAGCTTACATAAAGGAGGTAAAAGCCGAAGGTATTCAAGACCTCTCATTAAGGATCAAG
Seq A exon
GAGTGCTCTTGGCAAATGGAATACTTCTTAGATATTTATTTATTTTCTCCTGAGGATATTGCACTGAATGCAGCAGTTCTTCTATGGCCAAAGAAGATTAACCCTATTTTTGATGAGCATGATGAT
Seq C2 exon
CTGATTGAAAAGTCCAAACGTAAAGGAGAACAAGAACTAATTTATAAATCTGAGAAACTGACAGTGGAATTAGGGAAGCTAACACAGTCTGTGACAGAACTTGAAGAATACTCAGAACTGGATTGCATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005601-'11-14,'11-13,12-14=AN
Average complexity
A_C1
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAATTAAAGAACGTGCGT
R:
TGCATGCAATCCAGTTCTGAGT
Band lengths:
252-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]