MmuEX6040124 @ mm10
Exon Skipping
Gene
ENSMUSG00000021879 | Dnah12
Description
dynein, axonemal, heavy chain 12 [Source:MGI Symbol;Acc:MGI:107720]
Coordinates
chr14:26717909-26723631:+
Coord C1 exon
chr14:26717909-26718044
Coord A exon
chr14:26722088-26722213
Coord C2 exon
chr14:26723497-26723631
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATCTAGAGTTTCTTTTGTAGGAA
3' ss Score
4.88
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TATTTGCAGTGAATTTGAAGCAATTAGAGACCATGCGCTACGAGTTCCTGAGACCACAGAAGAAATGATGGAGCTAATTGCTTTCGTAGAAAGAGCTCGAACCGTAGGAATTCTTGACTTGGCTCTAAGGATCCAG
Seq A exon
GAATCTAAACGCCAAATGAGTTACTTTTTAGATGCTCTTCTAATGTCTCAAGAAGACTTAAATTTAAATGCAACTGTCCTCTTGTGGCCTACTAAAATTACCCCTGTCTTTGATGAGAATGATGAA
Seq C2 exon
CTCATTGAGAATGCTAAACATGCAAAAGAAAATGAACTAATAGCCAAGAGAGAAAAACTGATTTTGGAAATAGAAAAAGAATCACGTCGCATGGAGGAGTTCACCGAGTTTGCAGAACTGGACCGCATGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021879-'11-16,'11-15,14-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCATGCGCTACGAGTTC
R:
GATGCATGCGGTCCAGTTCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types