HsaEX6056763 @ hg38
Exon Skipping
Gene
ENSG00000174844 | DNAH12
Description
dynein axonemal heavy chain 12 [Source:HGNC Symbol;Acc:HGNC:2943]
Coordinates
chr3:57471540-57483511:-
Coord C1 exon
chr3:57483376-57483511
Coord A exon
chr3:57472546-57472671
Coord C2 exon
chr3:57471540-57471640
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATCCAGAGTTTCTTTTGTAGGAA
3' ss Score
4.45
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TATTTGCAGTGAATTTGAAGCAATTAAAGAACATGCATTAAAAGTCCCTGAAACAACAGAAGAGATGATGGATCTGATATCTTATGTAGAAAAAGCCCGGACTGTAGGAATCGAAGAGTTGATTTTAAGGATCCAG
Seq A exon
GAATCTAAACGCCAAATGAGTTACTTTTTAGATGTTTTCCTATTTCCTCAAGAAGACTTAGCTTTAAATGCAACTGTCCTCATGTGGCCTAGGAAAATTAATCCCATCTTTGATGAAAATGATGAG
Seq C2 exon
ATTAACTAACATGATCAAATTGTCTTTTAAAAAGCTAATTGAGAATGCTAAACATAAAAAAGAAAATGAACTAATGGCCAAGAGAGAGAAACTTATTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174844-'15-23,'15-22,16-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCAGTGAATTTGAAGCAATT
R:
CCAAAATAAGTTTCTCTCTCTTGGCC
Band lengths:
236-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains