DreEX6082659 @ danRer10
Exon Skipping
Gene
ENSDARG00000105123 | zer1
Description
zyg-11 related, cell cycle regulator [Source:ZFIN;Acc:ZDB-GENE-040426-2307]
Coordinates
chr21:165291-168127:+
Coord C1 exon
chr21:165291-165406
Coord A exon
chr21:166463-166651
Coord C2 exon
chr21:168030-168127
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATGCTGCGCTATGCTCTCAGTGA
3' ss Score
5.75
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
Exon sequences
Seq C1 exon
GAGTTTCCTGATAAACAGGAGCTGCACCGCAACATGCTGGGGCTGCTGGGTAATGTGGCGGAGGTGAAGGCGCTGAGACCACAGCTGCTGACCAGACAGTTCATCACCGTCTTCAG
Seq A exon
TGATCTGCTGGACAGTAAAGCGGACGGGATCGAGGTCTCCTATAACGCCTGCGGTGTTCTCTCACACATCATGTTTGACGGGCCGGGGGTCTGGAGTATGGAGGAGCCCAGCAGGACACACGTGATGGACAAGATGTGGACGGCCATCCAGAGCTGGGACGTGAGCTCGCGGAGGAACATCAACTACAG
Seq C2 exon
GTCGTTCGAGCCTATCCTGCGTCTCCTCCCTCAGAGCGGGGCTCCGGTCAGTCAGCACTGGGCCACGTGGGCGCTCTATAACCTGGTGTCTGTTTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105123-'12-20,'12-18,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(46.5=51.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAAACAGGAGCTGCACCG
R:
AACAGACACCAGGTTATAGAGCG
Band lengths:
202-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]