MmuEX1028334 @ mm10
Exon Skipping
Gene
ENSMUSG00000039686 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:MGI Symbol;Acc:MGI:2442511]
Coordinates
chr2:30101036-30102844:-
Coord C1 exon
chr2:30102729-30102844
Coord A exon
chr2:30101765-30101953
Coord C2 exon
chr2:30101036-30101133
Length
189 bp
Sequences
Splice sites
3' ss Seq
GATTTTCTCTCTCTTGGTAGCAA
3' ss Score
7.4
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GAGTTCCCAGAGAAGCAGGAGCTACACCGTAACATGCTAGGGCTCTTGGGGAATGTGGCAGAGGTAAAGGAGCTGCGACCTCAGTTGATGACCTCCCAGTTCATCAGCGTCTTCAG
Seq A exon
CAACCTGCTGGAGAGCAAGGCCGACGGCATTGAGGTTTCTTACAACGCCTGTGGTGTCCTCTCTCACATCATGTTTGATGGGCCTGAGGCCTGGGGTGTCTGTGAACCTCAGAGGGCAGAGGTGGAGGATCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAG
Seq C2 exon
GTCCTTTGAGCCAATCCTCCGCCTCCTTCCCCAGGGTATTTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039686-'31-29,'31-27,32-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(17.4=100)
A:
PF032249=V-ATPase_H_N=PD(13.7=46.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCAGAGAAGCAGGAGC
R:
GGTAGACAGACACGAGGTTGT
Band lengths:
213-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types