GgaEX0006361 @ galGal3
Exon Skipping
Gene
ENSGALG00000004659 | ZER1
Description
NA
Coordinates
chr17:5878846-5880582:-
Coord C1 exon
chr17:5880467-5880582
Coord A exon
chr17:5879923-5880111
Coord C2 exon
chr17:5878846-5878943
Length
189 bp
Sequences
Splice sites
3' ss Seq
GATTTCTTCTCTCTTGGCAGCAA
3' ss Score
8.2
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGTTCCCAGAGAAACAGGAGCTGCATCGCAATATGTTGGGCCTCCTGGGCAACGTGGCTGAGGTCAGGGAACTCCGTCCACAGCTCATGACCTCTCAGTTCATCAGCGTGTTCAG
Seq A exon
CAATCTGCTAGAGAGCAAAGCAGATGGGATTGAGGTATCCTATAATGCCTGTGGTGTGCTCTCCCATATCATGTTTGACGGTCCGGAGGCTTGGGGTATATGTGAGCCCCACCGAGAGGAAGTTGTAAAGAGGATGTGGGCAGCCATCCAGAGCTGGGATATCAACTCCAGGAGAAATATCAATTACAG
Seq C2 exon
GTCATTTGAACCAATCCTTCGACTCCTTCCACAAGGGATCTCTCCTGTCAGCCAGCACTGGGCTACCTGGGCACTGTATAACTTGGTCTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004659-'18-14,'18-13,19-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCCAGAGAAACAGGAGC
R:
GACAGAGACCAAGTTATACAGTGCC
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]