HsaEX0072579 @ hg19
Exon Skipping
Gene
ENSG00000160445 | ZER1
Description
zer-1 homolog (C. elegans) [Source:HGNC Symbol;Acc:30960]
Coordinates
chr9:131497613-131503166:-
Coord C1 exon
chr9:131503051-131503166
Coord A exon
chr9:131502210-131502398
Coord C2 exon
chr9:131497613-131497710
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTTCTCCTGGCAGCAA
3' ss Score
9.91
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GAATTCCCAGAGAAGCAGGAACTGCATAGGAATATGCTAGGACTTTTGGGGAATGTGGCAGAAGTGAAGGAGCTGAGGCCTCAACTAATGACTTCCCAGTTCATCAGCGTCTTCAG
Seq A exon
CAACCTGTTGGAGAGCAAGGCCGATGGGATCGAGGTTTCCTACAATGCCTGCGGCGTCCTCTCCCACATCATGTTTGATGGACCCGAGGCCTGGGGCGTCTGTGAGCCCCAGCGTGAGGAGGTGGAGGAACGCATGTGGGCTGCCATCCAGAGCTGGGACATAAACTCTCGGAGAAACATCAATTACAG
Seq C2 exon
GTCATTTGAACCAATTCTCCGCCTCCTTCCCCAGGGAATCTCTCCTGTCAGCCAGCACTGGGCAACCTGGGCCCTGTATAACCTCGTGTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(17.5=100)
A:
PF032249=V-ATPase_H_N=PD(13.8=46.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCCCAGAGAAGCAGGAACT
R:
GACAGACACGAGGTTATACAGGG
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)