HsaEX0072579 @ hg38
Exon Skipping
Gene
ENSG00000160445 | ZER1
Description
zyg-11 related cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr9:128735334-128740887:-
Coord C1 exon
chr9:128740772-128740887
Coord A exon
chr9:128739931-128740119
Coord C2 exon
chr9:128735334-128735431
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTTCTCCTGGCAGCAA
3' ss Score
9.91
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GAATTCCCAGAGAAGCAGGAACTGCATAGGAATATGCTAGGACTTTTGGGGAATGTGGCAGAAGTGAAGGAGCTGAGGCCTCAACTAATGACTTCCCAGTTCATCAGCGTCTTCAG
Seq A exon
CAACCTGTTGGAGAGCAAGGCCGATGGGATCGAGGTTTCCTACAATGCCTGCGGCGTCCTCTCCCACATCATGTTTGATGGACCCGAGGCCTGGGGCGTCTGTGAGCCCCAGCGTGAGGAGGTGGAGGAACGCATGTGGGCTGCCATCCAGAGCTGGGACATAAACTCTCGGAGAAACATCAATTACAG
Seq C2 exon
GTCATTTGAACCAATTCTCCGCCTCCTTCCCCAGGGAATCTCTCCTGTCAGCCAGCACTGGGCAACCTGGGCCCTGTATAACCTCGTGTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=FE(17.5=100)
A:
PF032249=V-ATPase_H_N=PD(13.8=46.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCCCAGAGAAGCAGGAACT
R:
GACAGACACGAGGTTATACAGGG
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development