RnoEX0100926 @ rn6
Exon Skipping
Gene
ENSRNOG00000025832 | Zer1
Description
zyg-11 related, cell cycle regulator [Source:RGD Symbol;Acc:1310284]
Coordinates
chr3:8666253-8668028:-
Coord C1 exon
chr3:8667913-8668028
Coord A exon
chr3:8667082-8667270
Coord C2 exon
chr3:8666253-8666350
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTTCTTCCCGGTAGCAA
3' ss Score
7.88
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GAGTTCCCAGAGAAGCAGGAGCTACACCGGAACATGCTCGGGCTCTTGGGGAATGTGGCAGAGGTGAAGGGGCTGCGGCCTCAGCTGATGACCTCTCAGTTCATCAGCGTCTTCAG
Seq A exon
CAACCTGCTGGAAAGCAAGGCCGATGGCATTGAGGTTTCTTACAATGCCTGTGGTGTCCTATCCCACATCATGTTTGATGGGCCTGAAGCCTGGGGTGTCTGTGAACCCCAGCGGGCAGAGGTGGAGGAGCGTATGTGGGCGGCCATCCAGAGCTGGGATATCAACTCCCGAAGGAATATCAACTACAG
Seq C2 exon
GTCCTTTGAGCCGATCCTCCGCCTCCTTCCCCAGGGCATCTCTCCAGTCAGCCAGCACTGGGCCACCTGGGCCCTGTACAACCTCGTGTCTGTCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025832-'26-29,'26-26,27-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCAGAGAAGCAGGAGC
R:
GGTAGACAGACACGAGGTTGT
Band lengths:
213-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]