DreEX6082857 @ danRer10
Exon Skipping
Gene
ENSDARG00000030022 | nup188
Description
nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
Coordinates
chr21:4426775-4428458:+
Coord C1 exon
chr21:4426775-4426944
Coord A exon
chr21:4427365-4427565
Coord C2 exon
chr21:4428366-4428458
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCTGTGTCAGGTG
3' ss Score
11.65
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
GAGGAGAGATTTCCCAGCTGCCCCAGCTGCTGCTGTGTGTGTGTGAGATGGTTCAGGATGAAGCCCTCGCATTGATTGACAGCACACGTCATATGATCCAGAGAGGTGATGTTCAGGAGGACAGTATGGAGACCGACAGTCCACATGTCCAGAAAGACCAGCAAGACTCT
Seq A exon
GTGTGTGTTCTGGCCCTTCATCTGTCTAAAGAGTTGTGTCGGGCTGATGAAGACGGTGAGCAGTGGCTGCAGGTGGTCCGGAAGCTGCCGGTTCTGCCATCAGTTCTCAGTGCTCTAGAACTCAGTCTGCGCTCCAAACAGAACCTGTACTTCACTGAGGCAGCGCTTCATCTGCTACTCACACTCGCCAGGACACCACAG
Seq C2 exon
GGGGCAGCAGCAGTGGCAGGAGCAGGAGTGATTCAGAGCATCTGTCTTCCTCTACTCAGTGTGTACGAGGGTCCAGCAAACGGAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030022-'41-40,'41-39,42-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGATTTCCCAGCTGC
R:
GATTGGCTCCGTTTGCTGGA
Band lengths:
261-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]