GgaEX0006129 @ galGal3
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
NA
Coordinates
chr17:5979745-5981231:+
Coord C1 exon
chr17:5979745-5979926
Coord A exon
chr17:5980263-5980463
Coord C2 exon
chr17:5981139-5981231
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTTCTCCCTTCCAGGTT
3' ss Score
13.69
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGAATGAGATCCCTCAGTACTCCCAGCTGGTGCTGAGTGTGTGTGAAACTCTCCAGGATGAGGTCATTGCACTCTTTGATCAGACTCGACATAGCCTGACCTTGGGGGATGCCACAGATGACAAGGACAGCATGGAAACAGATGATGCCTCCCGAGTTAAACACAAGGACCAGCGAGATGGG
Seq A exon
GTTTGTGTTTTGGGTCTGCATCTCGCAAAAGAGCTCTGTGAAGTTGATGATGATGGAGACTACTGGCTGCAGATTACTAGGAAAGTCCCTGTGCTTCCTACCATCTTTACTGCTTTGGAGATCAGCCTGAGAGTTAAACAAAACCTTCACTTCACAGAGGCCTCGTTACATCTGCTGCTGACCTTAGCAAGGACGCAGCAG
Seq C2 exon
GGAGCAGCAGCAGTGGCTGGGGCTGGTGTCTCACAGAGTGTCTGCCTGCCCCTCCTGAGCGTGTACCAGCTCAGCACTAATGGAGCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_MULTIEX6-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCCTCAGTACTCCCAGC
R:
TGAATGGCTCCATTAGTGCTGA
Band lengths:
268-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]